Gene Expression Profiles Deciphering Leaf Senescence Variation between Early- and Late-Senescence Cotton Lines
Identifieur interne : 000E37 ( Main/Exploration ); précédent : 000E36; suivant : 000E38Gene Expression Profiles Deciphering Leaf Senescence Variation between Early- and Late-Senescence Cotton Lines
Auteurs : Xiangqiang Kong [République populaire de Chine] ; Zhen Luo [République populaire de Chine] ; Hezhong Dong [République populaire de Chine] ; A. Egrinya Eneji [République populaire de Chine, Nigeria] ; Weijiang Li [République populaire de Chine] ; Hequan Lu [République populaire de Chine]Source :
- PLoS ONE [ 1932-6203 ] ; 2013.
Abstract
Leaf senescence varies greatly among genotypes of cotton (
Url:
DOI: 10.1371/journal.pone.0069847
PubMed: 23922821
PubMed Central: 3726770
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Gene Expression Profiles Deciphering Leaf Senescence Variation between Early- and Late-Senescence Cotton Lines</title><author><name sortKey="Kong, Xiangqiang" sort="Kong, Xiangqiang" uniqKey="Kong X" first="Xiangqiang" last="Kong">Xiangqiang Kong</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong</wicri:regionArea><wicri:noRegion>Shandong</wicri:noRegion></affiliation></author><author><name sortKey="Luo, Zhen" sort="Luo, Zhen" uniqKey="Luo Z" first="Zhen" last="Luo">Zhen Luo</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong</wicri:regionArea><wicri:noRegion>Shandong</wicri:noRegion></affiliation></author><author><name sortKey="Dong, Hezhong" sort="Dong, Hezhong" uniqKey="Dong H" first="Hezhong" last="Dong">Hezhong Dong</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong</wicri:regionArea><wicri:noRegion>Shandong</wicri:noRegion></affiliation></author><author><name sortKey="Eneji, A Egrinya" sort="Eneji, A Egrinya" uniqKey="Eneji A" first="A. Egrinya" last="Eneji">A. Egrinya Eneji</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong</wicri:regionArea><wicri:noRegion>Shandong</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Department of Soil Science, Faculty of Agriculture, University of Calabar, Calabar, Nigeria</addr-line></nlm:aff><country xml:lang="fr">Nigeria</country><wicri:regionArea>Department of Soil Science, Faculty of Agriculture, University of Calabar, Calabar</wicri:regionArea><wicri:noRegion>Calabar</wicri:noRegion></affiliation></author><author><name sortKey="Li, Weijiang" sort="Li, Weijiang" uniqKey="Li W" first="Weijiang" last="Li">Weijiang Li</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong</wicri:regionArea><wicri:noRegion>Shandong</wicri:noRegion></affiliation></author><author><name sortKey="Lu, Hequan" sort="Lu, Hequan" uniqKey="Lu H" first="Hequan" last="Lu">Hequan Lu</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong</wicri:regionArea><wicri:noRegion>Shandong</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">23922821</idno><idno type="pmc">3726770</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3726770</idno><idno type="RBID">PMC:3726770</idno><idno type="doi">10.1371/journal.pone.0069847</idno><date when="2013">2013</date><idno type="wicri:Area/Pmc/Corpus">001152</idno><idno type="wicri:Area/Pmc/Curation">001151</idno><idno type="wicri:Area/Pmc/Checkpoint">000A67</idno><idno type="wicri:Area/Ncbi/Merge">001382</idno><idno type="wicri:Area/Ncbi/Curation">001382</idno><idno type="wicri:Area/Ncbi/Checkpoint">001382</idno><idno type="wicri:Area/Main/Merge">000E41</idno><idno type="wicri:Area/Main/Curation">000E37</idno><idno type="wicri:Area/Main/Exploration">000E37</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Gene Expression Profiles Deciphering Leaf Senescence Variation between Early- and Late-Senescence Cotton Lines</title><author><name sortKey="Kong, Xiangqiang" sort="Kong, Xiangqiang" uniqKey="Kong X" first="Xiangqiang" last="Kong">Xiangqiang Kong</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong</wicri:regionArea><wicri:noRegion>Shandong</wicri:noRegion></affiliation></author><author><name sortKey="Luo, Zhen" sort="Luo, Zhen" uniqKey="Luo Z" first="Zhen" last="Luo">Zhen Luo</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong</wicri:regionArea><wicri:noRegion>Shandong</wicri:noRegion></affiliation></author><author><name sortKey="Dong, Hezhong" sort="Dong, Hezhong" uniqKey="Dong H" first="Hezhong" last="Dong">Hezhong Dong</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong</wicri:regionArea><wicri:noRegion>Shandong</wicri:noRegion></affiliation></author><author><name sortKey="Eneji, A Egrinya" sort="Eneji, A Egrinya" uniqKey="Eneji A" first="A. Egrinya" last="Eneji">A. Egrinya Eneji</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong</wicri:regionArea><wicri:noRegion>Shandong</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><addr-line>Department of Soil Science, Faculty of Agriculture, University of Calabar, Calabar, Nigeria</addr-line></nlm:aff><country xml:lang="fr">Nigeria</country><wicri:regionArea>Department of Soil Science, Faculty of Agriculture, University of Calabar, Calabar</wicri:regionArea><wicri:noRegion>Calabar</wicri:noRegion></affiliation></author><author><name sortKey="Li, Weijiang" sort="Li, Weijiang" uniqKey="Li W" first="Weijiang" last="Li">Weijiang Li</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong</wicri:regionArea><wicri:noRegion>Shandong</wicri:noRegion></affiliation></author><author><name sortKey="Lu, Hequan" sort="Lu, Hequan" uniqKey="Lu H" first="Hequan" last="Lu">Hequan Lu</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Cotton Research Center, Shandong Key Lab for Cotton Culture and Physiology, Shandong Academy of Agricultural Sciences, Jinan, Shandong</wicri:regionArea><wicri:noRegion>Shandong</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Leaf senescence varies greatly among genotypes of cotton (<italic>Gossypium hirsutium</italic> L), possibly due to the different expression of senescence-related genes. To determine genes involved in leaf senescence, we performed genome-wide transcriptional profiling of the main-stem leaves of an early- (K1) and a late-senescence (K2) cotton line at 110 day after planting (DAP) using the Solexa technology. The profiling analysis indicated that 1132 genes were up-regulated and 455 genes down-regulated in K1 compared with K2 at 110 DAP. The Solexa data were highly consistent with, and thus were validated by those from real-time quantitative PCR (RT-PCR). Most of the genes related to photosynthesis, anabolism of carbohydrates and other biomolecules were down-regulated, but those for catabolism of proteins, nucleic acids, lipids and nutrient recycling were mostly up-regulated in K1 compared with K2. Fifty-one differently expressed hormone-related genes were identified, of which 5 ethylene, 3 brassinosteroid (BR), 5 JA, 18 auxin, 8 GA and 1 ABA related genes were up-regulated in K1 compared with K2, indicating that these hormone-related genes might play crucial roles in early senescence of K1 leaves. Many differently expressed transcription factor (TF) genes were identified and 11 <italic>NAC</italic> and 8 <italic>WRKY</italic> TF genes were up-regulated in K1 compared with K2, suggesting that TF genes, especially <italic>NAC</italic> and <italic>WRKY</italic> genes were involved in early senescence of K1 leaves. Genotypic variation in leaf senescence was attributed to differently expressed genes, particularly hormone-related and TF genes.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Gay, Ap" uniqKey="Gay A">AP Gay</name></author><author><name sortKey="Thomas, H" uniqKey="Thomas H">H Thomas</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Thomas, H" uniqKey="Thomas H">H Thomas</name></author><author><name sortKey="Howarth, Cj" uniqKey="Howarth C">CJ Howarth</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Guin, G" uniqKey="Guin G">G Guin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Dong, Hz" uniqKey="Dong H">HZ Dong</name></author><author><name sortKey="Li, Wj" uniqKey="Li W">Wj Li</name></author><author><name sortKey="Eneji, Ae" uniqKey="Eneji A">AE Eneji</name></author><author><name sortKey="Zhang, Dm" uniqKey="Zhang D">DM 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Egrinya" last="Eneji">A. Egrinya Eneji</name><name sortKey="Li, Weijiang" sort="Li, Weijiang" uniqKey="Li W" first="Weijiang" last="Li">Weijiang Li</name><name sortKey="Lu, Hequan" sort="Lu, Hequan" uniqKey="Lu H" first="Hequan" last="Lu">Hequan Lu</name><name sortKey="Luo, Zhen" sort="Luo, Zhen" uniqKey="Luo Z" first="Zhen" last="Luo">Zhen Luo</name></country><country name="Nigeria"><noRegion><name sortKey="Eneji, A Egrinya" sort="Eneji, A Egrinya" uniqKey="Eneji A" first="A. Egrinya" last="Eneji">A. Egrinya Eneji</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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